Undergraduate Publications – 2011

  1. Day GS, Pan B, Kellenberger DL, Foxman BM, Thomas CM. Guilty as charged: non-innocent behavior by a pincer ligand featuring a central cationic phosphenium donor. Chem Commun (Camb). 2011;47(12):3634-6.
  2. Brown JH, Senthil Kumar VS, O’Neall-Hennessey E, Reshetnikova L, Robinson H, Nguyen-McCarty M, Szent-Gyorgyi AG, Cohen C. Visualizing key hinges and a potential major source of compliance in the lever arm of myosin. Proc Natl Acad Sci U S A. 2011;108(1):114-9. [science blog]
  3. Treacy DJ, Sankaran SM, Gordon-Messer S, Saly D, Miller R, Isaac SR, Kosinski-Collins MS. Implementation of a project-based molecular biology laboratory emphasizing protein structure-function relationships in a large introductory biology laboratory course. CBE Life Sci Educ. 2011;10(1):18-24.
  4. Ronish B, Hakhverdyan M, Stahl K, Belak S, Leblanc N, Wangh L. Design and verification of a highly reliable Linear-After-The-Exponential PCR (LATE-PCR) assay for the detection of African swine fever virus. J Virol Methods. 2011;172(1-2):8-15.
  5. Seier T, Padgett DR, Zilberberg G, Sutera VA, Jr., Toha N, Lovett ST. Insights into Mutagenesis Using Escherichia coli Chromosomal lacZ Strains that Enable Detection of a Wide Spectrum of Mutational Events. Genetics 2011; 188:247-2622. [science blog]
  6. Pulver SR, Hornstein NJ, Land BL, Johnson BR. Optogenetics in the teaching laboratory: using channelrhodopsin-2 to study the neural basis of behavior and synaptic physiology in Drosophila. Adv Physiol Educ. 2011;35(1):82-91.
  7. Kim JA, Hicks WM, Li J, Tay SY, Haber JE. Protein phosphatases Pph3, Ptc2, and Ptc3 play redundant roles in DNA double strand break repair by homologous recombination. Mol Cell Biol. 2011;31:507-16. [science blog]
  8. Herzfeld J, Rand D, Matsuki Y, Daviso E, Mak-Jurkauskas M, Mamajanov I. Molecular Structure of Humin and Melanoidin via Solid State NMR. J Phys Chem B. 2011;115(19):5741-5. [science blog]
  9. Szabo TM, Chen R, Goeritz ML, Maloney RT, Tang LS, Li L, Marder E. Distribution and physiological effects of B-type allatostatins (myoinhibitory peptides, MIPs) in the stomatogastric nervous system of the crab, Cancer borealis. J Comp Neurol. 2011;519:2658-76.
  10. Setty VN, Zhou W, Foxman BM, Thomas CM. Subtle Differences Between Zr and Hf in Early/Late Heterobimetallic Complexes with Cobalt. Inorg Chem. 2011 May 16;50(10):4647-55.
  11. Huacuja R, Graham DJ, Fafard CM, Chen CH, Foxman BM, Herbert DE, Alliger G, Thomas CM, Ozerov OV. Reactivity of a Pd(I)-Pd(I) Dimer with O2: Monohapto Pd Superoxide and Dipalladium Peroxide in Equilibrium. Journal of the American Chemical Society. 2011;133(11):3820-3.
  12. Ahlen S, Battat JBR, Caldwell T, Deaconu C, Dujmic D, Fedus W, Fisher P, Golub F, Henderson S, Inglis A, Kaboth A, Kohse G, Lanza R, Lee A, Lopez J, Monroe J, Sahin T, Sciolla G, Skvorodnev N, Tomita H, Wellenstein H, Wolfe I, Yamamoto R, Yegoryan H, First dark matter search results from a surface run of the 10-L DMTPC directional dark matter detector. Phys Lett B. 2011;695(1-4):124-9.
  13. Zhao F, Weitzel CS, Gao Y, Browdy HM, Shi J, Lin HC, Lovett ST, Xu B. β-Galactosidase-instructed formation of molecular nanofibers and a hydrogel. Nanoscale. 2011 Jul;3(7):2859-61.
  14. Dolnik M, Bansagi T, Ansari S, Valent I, Epstein IR. Locking of Turing patterns in the chlorine dioxide-iodine-malonic acid reaction with one-dimensional spatial periodic forcing. Phys Chem Chem Phys. 2011;13(27):12578-83.
  15. Slawson JB, Kuklin EA, Ejima A, Mukherjee K, Ostrovsky L, Griffith LC. Central Regulation of Locomotor Behavior of Drosophila melanogaster Depends on a CASK Isoform Containing CaMK-like and L27 Domains. Genetics. 2011;187(1):171-84. [science blog]
  16. Beverly M, Anbil S, Sengupta P. Degeneracy and Neuromodulation among Thermosensory Neurons Contribute to Robust Thermosensory Behaviors in Caenorhabditis elegans. J Neurosci. 2011;31(32):11718-27. [science blog]
  17. Reeves, D., Cheveralls, K., and Kondev, J. (2011). Regulation of biochemical reaction rates by flexible tethers. Phys Rev E Stat Nonlin Soft Matter Phys. 2011;84(2-1):021914.
  18. Nicastro D, Fu X, Heuser T, Tso A, Porter ME, Linck RW.  Cryo-electron tomography reveals conserved features of doublet microtubules in flagella. Proc Natl Acad Sci U S A. 2011;108(42):E845-53. [science blog]
  19. Boggio KJ, Obasuyi E, Sugino K, Nelson SB, Agar NY, Agar JN. Recent advances in single-cell MALDI mass spectrometry imaging and potential clinical impact. Expert review of proteomics. 2011;8(5):591-604.
  20. Coic E, Martin JS, Ryu T, Tay SY, Kondev J, Haber JE. Dynamics of Homology Searching During Gene Conversion in Saccharomyces cerevisiae Revealed by Donor Competition.  Genetics. 2011;189(4):1225-33.
  21. Patton GC, Stenmark P, Gollapalli DR, Sevastik R, Kursula P, Flodin S, Schuler H, Swales CT, Eklund H, Himo F, Nordlund P, Hedstrom L. Cofactor mobility determines reaction outcome in the IMPDH and GMPR (beta-alpha)(8) barrel enzymes. Nat Chem Biol. 2011;7(12):950-8.
  22. Bower GC, Bolatto A, Ford EB, Fries A, Kalas P, Sanchez K, Sanderbeck P, Viscomi V. Radio Interferometric Planet Search. Ii. Constraints on Sub-Jupiter-Mass Companions to Gj 896a. Astrophys J. 2011;740(1).
  23. Abruzzi KC, Rodriguez J, Menet JS, Desrochers J, Zadina A, Luo W, Tkachev S, Rosbash M. Drosophila CLOCK target gene characterization: implications for circadian tissue-specific gene expression. Genes Dev. 2011;25(22):2374-86.
  24. Demott JC, Surawatanawong P, Barnett SM, Chen CH, Foxman BM, Ozerov OV. Experimental and computational exploration of the dynamic behavior of (PNP)BF(2), a boron compound supported by an amido/bis(phosphine) pincer ligand. Dalton Trans. 2011;40(43):11562-70.
  25. Neseliler S, Narayanan D, Fortis-Santiago Y, Katz DB, Birren SJ. Genetically induced cholinergic hyper-innervation enhances taste learning. Front Syst Neurosci. 2011;5:97.
  26. Puri M, Gatard S, Smith DA, Ozerov OV. Competition Studies of Oxidative Addition of Aryl Halides to the (PNP)Rh Fragment. Organometallics. 2011;30(9):2472-82.
  27. Sanhueza M, Fernandez-Villalobos G, Stein IS, Kasumova G, Zhang P, Bayer KU, Otmakhov N, Hell JW, Lisman J. Role of the CaMKII/NMDA Receptor Complex in the Maintenance of Synaptic Strength. J Neurosci. 2011;31(25):9170-8. [story at Brandeis NOW]
  28. MacPherson IS, Temme JS, Habeshian S, Felczak K, Pankiewicz K, Hedstrom L, Krauss IJ. Multivalent glycocluster design through directed evolution. Angew Chem Int Ed Engl. 2011;50(47):11238-42 [science blog]
  29. Ju S, Tardiff DF, Han H, Divya K, Zhong Q, Maquat LE, Bosco DA, Hayward LJ, Brown RH, Jr., Lindquist S, Ringe D, Petsko GA. A yeast model of FUS/TLS-dependent cytotoxicity. PLoS Biol. 2011;9(4):e1001052. [science blog]
  30. Hamami A, Serbun SJ, Gutchess AH. Self-referencing enhances memory specificity with age. Psychology and aging. 2011;26(3):636-46.
  31. Pan SH, Recht D, Charnvanichborikarn S, Williams JS, Aziz MJ. Enhanced visible and near-infrared optical absorption in silicon supersaturated with chalcogens. Appl Phys Lett. 2011;98(12). 
  32. Hoskins AA, Friedman LJ, Gallagher SS, Crawford DJ, Anderson EG, Wombacher R, Ramirez N, Cornish VW, Gelles J, Moore MJ. Ordered and dynamic assembly of single spliceosomes. Science. 2011;331(6022):1289-95.
  33. Pappa HM, Saslowsky TM, Filip-Dhima R, DiFabio D, Lahsinoui HH, Akkad A, Grand RJ, Gordon CM. Efficacy and harms of nasal calcitonin in improving bone density in young patients with inflammatory bowel disease: a randomized, placebo-controlled, double-blind trial. Am J Gastroenterol. 2011;106(8):1527-43.
  34. Campbell NR, Sun B, Singh RP, Deng L. Cinchona alkaloid catalyzed enantioselective amination of alpha,beta-unsaturated ketones: an asymmetric approach to Delta-pyrazolines. Advanced synthesis & catalysis. 2011;353(17):3123-8.
  35. Zhao F, Gao Y, Shi J, Browdy HM, Xu B. Novel anisotropic supramolecular hydrogel with high stability over a wide pH range. Langmuir. 2011;27(4):1510-2.
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