Undergraduate Publications – 2016

Names of undergraduate students from Brandeis are indicated below in bold face

  1. Puvenna V, Engeler M, Banjara M, Brennan C, Schreiber P, Dadas A, Bahrami A, Solanki J, Bandyopadhyay A, Morris JK, Bernick C, Ghosh C, Bazarian JJ, Janigro D. Is phosphorylated tau unique to chronic traumatic encephalopathy? Phosphorylated tau in epileptic brain and chronic traumatic encephalopathy. Brain Res. 2016;1630:225-40.
  2. Baez-Santiago MA, Reid EE, Moran A, Maier JX, Marrero-Garcia Y, Katz DB. Dynamic taste responses of parabrachial pontine neurons in awake rats. J Neurophysiol. 2016:jn 00311 2015.
  3. Lee CS, Wang RW, Chang HH, Capurso D, Segal MR, Haber JE. Chromosome position determines the success of double-strand break repair. Proc Natl Acad Sci U S A. 2016;113(2):E146-54.
  4. Steindel PA, Chen EH, Wirth JD, Theobald DL. Gradual neofunctionalization in the convergent evolution of trichomonad lactate and malate dehydrogenases. Protein Sci. 2016;25(7):1319-31.
  5. Fritz-Laylin LK, Levy YY, Levitan E, Chen S, Cande WZ, Lai EY, Fulton C. Rapid centriole assembly in naegleria reveals conserved roles for both de novo and mentored assembly. Cytoskeleton (Hoboken). 2016;73(3):109-16.
  6. Arora GK, Tran SL, Rizzo N, Jain A, Welte MA. Temporal control of bidirectional lipid-droplet motion depends on the ratio of kinesin-1 and its cofactor Halo. Journal of Cell Science. 2016;129(7):1416-28.
  7. Colthart AM, Tietz DR, Ni Y, Friedman JL, Dang M, Pochapsky TC. Detection of substrate-dependent conformational changes in the P450 fold by nuclear magnetic resonance. Scientific reports. 2016;6:22035.
  8. Wang AL, Gold JM, Tompkins N, Heymann M, Harrington KI, Fraden S. Configurable NOR gate arrays from Belousov-Zhabotinsky micro-droplets. The European Physical Journal Special Topics. 2016;225(1):211-27.
  9. Parisky KM, Agosto Rivera JL, Donelson NC, Kotecha S, Griffith LC. Reorganization of Sleep by Temperature in Drosophila Requires Light, the Homeostat, and the Circadian Clock. Current Biology. 2016;26(7):882-92.
  10. Zhou J, Du X, Yamagata N, Xu B. Enzyme-Instructed Self-Assembly of Small d-Peptides as a Multiple-Step Process for Selectively Killing Cancer Cells. J Am Chem Soc. 2016.
  11. Neal SJ, Park J, DiTirro D, Yoon J, Shibuya M, Choi W, Schroeder FC, Butcher RA, Kim K, Sengupta P. A Forward Genetic Screen for Molecules Involved in Pheromone-Induced Dauer Formation in Caenorhabditis elegans. G3 (Bethesda). 2016;6(5):1475-87.
  12. Hengen KB, Torrado Pacheco A, McGregor JN, Van Hooser SD, Turrigiano GG. Neuronal Firing Rate Homeostasis is Inhibited by Sleep and Promoted by Wake. Cell. 2016;165(1):180-91.. [science blog]
  13. Chin SM, Jansen S, Goode BL. TIRF microscopy analysis of human Cof1, Cof2, and ADF effects on actin filament severing and turnover. J Mol Biol. 2016;428(8):1604-16.
  14. Deshpande AR, Wagenpfeil K, Pochapsky TC, Petsko GA, Ringe D. Metal-Dependent Function of a Mammalian Acireductone Dioxygenase. Biochemistry. 2016;55(9):1398-407.
  15. Flores VL, Moran A, Bernstein M, Katz DB. Preexposure to salty and sour taste enhances conditioned taste aversion to novel sucrose. Learn Mem. 2016;23(5):221-8.
  16. Zhou R, Kuang Y, Zhou J, Du X, Li J, Shi J, Haburcak R, Xu B. Nanonets Collect Cancer Secretome from Pericellular Space. PLoS One. 2016;11(4):e0154126.
  17. Tsabar M, Haase J, Harrison B, Snider CE, Eldridge B, Kaminsky L, Hine RM, Haber JE, Bloom K. A Cohesin-Based Partitioning Mechanism Revealed upon Transcriptional Inactivation of Centromere. Plos Genet. 2016;12(4):e1006021.
  18. Greenwald E, Yuki K. A translational consideration of intercellular adhesion molecule-1 biology in the perioperative setting. Transl Perioper Pain Med. 2016;1(2):17-23.
  19. Ekesan S, Lin DY, Herzfeld J. Magnetism and Bond Order in Diatomic Molecules Described by Semi-Classical Electrons. J Phys Chem B. 2016;120(26):6264-9.
  20. Tsabar M, Waterman DP, Aguilar F, Katsnelson L, Eapen VV, Memisoglu G, Haber JE. Asf1 facilitates dephosphorylation of Rad53 after DNA double-strand break repair. Genes Dev. 2016;30(10):1211-24.
  21. Amichetti NM, White AG, Wingfield A. Multiple solutions to the same problem: utilization of plausibility and syntax in sentence comprehension by older adults with impaired hearing. Frontiers in Psychology. 2016; 7:7892016.
  22. Gaskins DK, Pruc EE, Epstein IR, Dolnik M. Multifold Increases in Turing Pattern Wavelength in the Chlorine Dioxide-Iodine-Malonic Acid Reaction-Diffusion System. Physical Review Letters. 2016;117(5).
  23. Sands M, Garbacz A, Isaacowitz DM. Just Change the Channel? Studying Effects of Age on Emotion Regulation Using a TV Watching Paradigm. Social Psychological and Personality Science. 2016;7(8):788-95.
  24. Guo F, Yu J, Jung HJ, Abruzzi KC, Luo W, Griffith LC, Rosbash M. Circadian neuron feedback controls the Drosophila sleep-activity profile. Nature. 2016;536(7616):292-7.
  25. Wang W, Nguyen LT, Burlak C, Chegini F, Guo F, Chataway T, Ju S, Fisher OS, Miller DW, Datta D, Wu F, Wu CX, Landeru A, Wells JA, Cookson MR, Boxer MB, Thomas CJ, Gai WP, Ringe D, Petsko GA, Hoang QQ. Caspase-1 causes truncation and aggregation of the Parkinson’s disease-associated protein α-synuclein. Proc Natl Acad Sci U S A. 2016;113(34):9587-92.
  26. Deshpande M, Feiger Z, Shilton AK, Luo CC, Silverman E, Rodal AA. Role of BMP receptor traffic in synaptic growth defects in an ALS model. Mol Biol Cell. 2016;27(19):2898-910.
  27. Wang H, Feng Z, Wu D, Fritzsching KJ, Rigney M, Zhou J, Jiang Y, Schmidt-Rohr K, Xu B. Enzyme-Regulated Supramolecular Assemblies of Cholesterol Conjugates against Drug-Resistant Ovarian Cancer Cells. J Am Chem Soc. 2016;138(34):10758-61.
  28. Steinmetz CC, Tatavarty V, Sugino K, Shima Y, Joseph A, Lin H, Rutlin M, Lambo M, Hempel CM, Okaty BW, Paradis S, Nelson SB, Turrigiano G. Upregulation of μ3A Drives Homeostatic Plasticity by Rerouting AMPAR into the Recycling Endosomal Pathway. Cell reports. 2016;16(10):2711-22.
  29. Stanishneva-Konovalova TB, Kelley CF, Eskin TL, Messelaar EM, Wasserman SA, Sokolova OS, Rodal AA. Coordinated autoinhibition of F-BAR domain membrane binding and WASp activation by Nervous Wreck. Proc Natl Acad Sci U S A. 2016;113(38):E5552-61.
  30. Levitan D, Fortis-Santiago Y, Figueroa JA, Reid EE, Yoshida T, Barry NC, Russo A, Katz DB. Memory Retrieval Has a Dynamic Influence on the Maintenance Mechanisms That Are Sensitive to zeta-Inhibitory Peptide (ZIP). J Neurosci. 2016;36(41):10654-62.
  31. Sirianni NM, Yuan H, Rice JE, Kaufman RS, Deng J, Fulton C, Wangh LJ. Closed-Tube Barcoding. Genome. 2016:1-13.
  32. Haburcak R, Shi J, Du X, Yuan D, Xu B. Ligand-Receptor Interaction Modulates the Energy Landscape of Enzyme-Instructed Self-Assembly of Small Molecules. J Am Chem Soc. 2016;138(47):15397-404.
  33. Alioto SL, Garabedian MV, Bellavance DR, Goode BL. Tropomyosin and Profilin Cooperate to Promote Formin-Mediated Actin Nucleation and Drive Yeast Actin Cable Assembly. Curr Biol 2016;26(23):3230-7.
  34. O’Toole SM, Ferrer MM, Mekonnen J, Zhang H, Shima Y, Ladle DR, Nelson SB. Dicer maintains the identity and function of proprioceptive sensory neurons. J Neurophysiol. 2016:jn 00763 2016.
  35. Li J, Du X, Hashim S, Shy A, Xu B. Aromatic-Aromatic Interactions Enable alpha-Helix to beta-Sheet Transition of Peptides to Form Supramolecular Hydrogels. J Am Chem Soc. 2016;139(1):71-4.
  36. Saper NI, Bezpalko MW, Foxman BM, Thomas CM. Synthesis of Chiral Heterobimetallic Tris(Phosphinoamide) Zr/Co Complexes. Polyhedron 2016;114:88-95.
  37. Stapleford CJ, Väänänen DJ, Kneller JP, McLaughlin GC, Shapiro BT. Nonstandard neutrino interactions in supernovae. Phys Rev D. 2016;94(9).
  38. Shamay Y, Elkabets M, Li H, Shah J, Brook S, Wang F, Adler K, Baut E, Scaltriti M, Jena PV, Gardner EE, Poirier JT, Rudin CM, Baselga J, Haimovitz-Friedman A, Heller DA. P-selectin is a nanotherapeutic delivery target in the tumor microenvironment. Sci Transl Med. 2016;8(345):345ra87.

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