Undergraduate Publications – 2015

Names of undergraduate students from Brandeis are indicated below in bold face

  1. Shi J, Du X, Huang Y, Zhou J, Yuan D, Wu D, Zhang Y, Haburcak R, Epstein IR, Xu B. Ligand-receptor interaction catalyzes the aggregation of small molecules to induce cell necroptosis. J Am Chem Soc. 2015;137(1):26-9.
  2. Hass MA, Liu W, Agafonov RV, Otten R, Phung LA, Schilder JT, Kern D, Ubbink M. A minor conformation of a lanthanide tag on adenylate kinase characterized by paramagnetic relaxation dispersion NMR spectroscopy. J Biomol NMR. 2015;61(2):123-36.
  3. Kerns SJ, Agafonov RV, Cho YJ, Pontiggia F, Otten R, Pachov DV, Kutter S, Phung LA, Murphy PN, Thai V, Alber T, Hagan MF, Kern D. The energy landscape of adenylate kinase during catalysis. Nat Struct Mol Biol. 2015;22(2):124-31.
  4. Horvath V, Kutner DJ, Chavis III JT, Epstein IR. Pulse-coupled BZ oscillators with unequal coupling strengths. Phys Chem Chem Phys. 2015;17(6):4664-76.
  5. Lee KH, Napoline JW, Bezpalko MW, Foxman BM, Thomas CM. Probing Substituent Effects in Phosphinoamine Ligands Using Mo(CO)5L Complexes. Polyhedron. 2015;87:354-60.
  6. Abruzzi K, Chen X, Nagoshi E, Zadina A, Rosbash M. RNA-seq Profiling of Small Numbers of Drosophila Neurons. Method Enzymol. 2015;551:369-86.
  7. Mathioudakis N, Sundaresh R, Larsen A, Ruff W, Schiller J, Guerrero-Cazares H, Burger P, Salvatori R, Quinones-Hinojosa A. Expression of the pituitary stem/progenitor marker GFRalpha2 in human pituitary adenomas and normal pituitary. Pituitary. 2015;18(1):31-41.
  8. Shi J, Du X, Yuan D, Haburcak R, Wu D, Zhou N, Xu B. Enzyme transformation to modulate the ligand-receptor interactions between small molecules. Chem Commun (Camb). 2015;51(23):4899-901.
  9. McInnis CM, Wang D, Gianferante D, Hanlin L, Chen X, Thoma MV, Rohleder N. Response and habituation of pro and anti inflammatory gene expression to repeated acute stress. Brain Behav Immun. 2015;46:237-48.
  10. Zaltsman JB, Heimel JA, Van Hooser SD. Weak orientation and direction selectivity in lateral geniculate nucleus representing central vision in the gray squirrel Sciurus carolinensis. J Neurophysiol. 2015;113(7):2987-97
  11. Beadle JN, Sheehan AH, Dahlben B, Gutchess AH. Aging, empathy, and prosociality. J Gerontol B Psychol Sci Soc Sci. 2015;70(2):215-24
  12. Turman DL, Nathanson JT, Stockbridge RB, Street TO, Miller C. Two-sided block of a dual-topology F- channel. Proc Natl Acad Sci U S A. 2015;112(18):5697-701.
  13. Cooper DL, Boyle DC, Lovett ST. Genetic Analysis of Escherichia coli RadA: Functional Motifs and Genetic Interactions. Mol Microbiol. 2015;95(5):769-79.
  14. Jansen S, Collins A, Chin SM, Ydenberg CA, Gelles J, Goode BL. Single-molecule imaging of a three-component ordered actin disassembly mechanism. Nat Commun. 2015;6:7202.
  15. Van Gorkom KJ, Wardle JFC, Rauch AP, Gobeille DB. Comparing different indicators of quasar orientation. Mon Not R Astron Soc. 2015;450(4):4240-7.
  16. Posner SR, Lorson LC, Gell AR, Foxman BM. Experimental Establishment of Mother-Daughter Orientation Relationships and Twinning Effects in Phase Transitions : A Great Legacy from Jack Gougoutas and Peggy Etter. Cryst Growth Des. 2015:150603105504006.
  17. Tompkins N, Cambria MC, Wang AL, Heymann M, Fraden S. Creation and perturbation of planar networks of chemical oscillators. Chaos: An Interdisciplinary Journal of Nonlinear Science. 2015;25(6):064611.
  18. Schulz R, Terry SF. The Science, Applications, and Ethical Concerns Surrounding Low Copy Number DNA Analysis. Genet Test Mol Biomarkers. 2015;19(6):281-2.
  19. Gainey MA, Tatavarty V, Nahmani M, Lin H, Turrigiano GG. Activity-dependent synaptic GRIP1 accumulation drives synaptic scaling up in response to action potential blockade. Proceedings of the National Academy of Sciences. 2015:201510754.
  20. Ydenberg CA, Johnston A, Weinstein J, Bellavance D, Jansen S, Goode BL. Combinatorial genetic analysis of a network of actin disassembly-promoting factors. Cytoskeleton (Hoboken). 2015;72(7):349-61.
  21. Boltax AL, Armanious S, Kosinski-Collins MS, Pontrello JK. Connecting biology and organic chemistry introductory laboratory courses through a collaborative research project. Biochem Mol Biol Educ. 2015;43(4):233-44.
  22. Jiang H, Zhao L, Dong X, He A, Zheng C, Johansson M, Karlsson A, Zheng X. Tanshinone IIA enhances bystander cell killing of cancer cells expressing Drosophila melanogaster deoxyribonucleoside kinase in nuclei and mitochondria. Oncology reports.2015;34(3):1487-93.
  23. Gutchess AH, Sokal R, Coleman JA, Gotthilf G, Grewal L, Rosa N. Age differences in self-referencing: Evidence for common and distinct encoding strategies.. Brain Res. 2015;1612:118-27.
  24. Zhou J, Du X, Li J, Yamagata N, Xu B. Taurine Boosts Cellular Uptake of Small d-Peptides for Enzyme-Instructed Intracellular Molecular Self-Assembly. J Am Chem Soc. 2015;137(32):10040-3.
  25. Shi J, Du X, Yuan D, Haburcak R, Zhou N, Xu B. Supramolecular Detoxification of Neurotoxic Nanofibrils of Small Molecules via Morphological Switch. Bioconjug Chem. 2015;26(9):1879-83.
  26. Gabuzda DC, Knuettel S, Reardon B. Transverse Faraday-rotation gradients across the jets of 15 active galactic nuclei. Mon Not R Astron Soc. 2015;450(3):2441-50.
  27. Liu C, Haynes PR, Donelson NC, Aharon S, Griffith LC. Sleep in populations of Drosophila melanogaster. eNeuro. 2015;2(4).
  28. Guo Z, Tzvetkova B, Bassik JM, Bodziak T, Wojnar BM, Qiao W, Obaida MA, Nelson SB, Hu BH, Yu P. RNASeqMetaDB: a database and web server for navigating metadata of publicly available mouse RNA-Seq data sets. Bioinformatics. 2015;31(24):4038-40.
  29. Roberts DH, Cohen JP, Lu J, Saripalli L, Subrahmanyan R. The Abundance of X-Shaped Radio Sources. I. Vla Survey of 52 Sources with Off-Axis Distortions. The Astrophysical Journal Supplement Series. 2015;220(1):7. [commentary at Astronomy magazine]
  30. Brown LT, Sutera VA, Jr., Zhou S, Weitzel CS, Cheng Y, Lovett ST. Connecting Replication and Repair: YoaA, a Helicase-Related Protein, Promotes Azidothymidine Tolerance through Association with Chi, an Accessory Clamp Loader Protein. Plos Genet. 2015;11(11):e1005651.
  31. Rawlins CM, Salisbury JP, Feldman DR, Isim S, Agar NY, Luther E, Agar JN. Imaging and Mapping of Tissue Constituents at the Single-Cell Level Using MALDI MSI and Quantitative Laser Scanning Cytometry. Methods Mol Biol. 2015;1346:133-49.
  32. Shi J, Yuan D, Haburcak R, Zhang Q, Zhao C, Zhang X, Xu B. Enzymatic Dissolution of Biocomposite Solids Consisting of Phosphopeptides to Form Supramolecular Hydrogels. Chemistry 2015;21(50):18047-51.
  33. Keller AS, Sekuler R. Memory and learning with rapid audiovisual sequences. J Vis. 2015;15(15):7.
  34. Kumar RP, Ranaghan MJ, Ganjei AY, Oprian DD. Crystal Structure of Recoverin with Calcium Ions Bound to Both Functional EF-Hands. Biochemistry. 2015;54(49):7222-8.
  35. Johnson MD, Fish VL, Doeleman SS, Marrone DP, Plambeck RL, Wardle JFC, Akiyama K, Asada K, Beaudoin C, Blackburn L, Blundell R, Bower GC, Brinkerink C, Broderick AE, Cappallo R, Chael AA, Crew GB, Dexter J, Dexter M, Freund R, Friberg P, Gold R, Gurwell MA, Ho PTP, Honma M, Inoue M, Kosowsky M, Krichbaum TP, Lamb J, Loeb A, Lu RS, MacMahon D, McKinney JC, Moran JM, Narayan R, Primiani RA, Psaltis D, Rogers AEE, Rosenfeld K, SooHoo J, Tilanus RPJ, Titus M, Vertatschitsch L, Weintroub J, Wright M, Young KH, Zensus JA, Ziurys LM. Resolved magnetic-field structure and variability near the event horizon of Sagittarius A. Science. 2015;350(6265):1242-5. [comment]
  36. Kelley CF, Messelaar EM, Eskin TL, Wang S, Song K, Vishnia K, Becalska AN, Shupliakov O, Hagan MF, Danino D, Sokolova OS, Nicastro D, Rodal AA. Membrane Charge Directs the Outcome of F-BAR Domain Lipid Binding and Autoregulation. Cell reports. 2015;13(11):2597-609
  37. DeScioli P, Karpoff R. People’s Judgments About Classic Property Law Cases. Hum Nat. 2015;26(2):184-209.
  38. Koles K, Yeh AR, Rodal AA. Tissue-specific tagging of endogenous loci in Drosophila melanogaster. Biol Open. 2015;5(1):83-9.

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